LSB Version: :core-3.1-amd64:core-3.1-ia32:core-3.1-noarch:graphics-3.1-amd64:graphics-3.1-ia32:graphics-3.1-noarch Distributor ID: Fedora Description: Fedora release 7 (Moonshine) Release: 7 Codename: Moonshine libs version is: lrwxrwxrwx 1 root root 11 2008-02-18 06:51 /lib/libc.so.6 -> libc-2.6.so the gcc version is: Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20070502 (Red Hat 4.1.2-12) OpenGL found at /usr/include/GL platform is linux Linux balamurgan.crlindia.com 2.6.21-1.3194.fc7 #1 SMP Wed May 23 22:47:07 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux Disabling assert(). ln: creating symbolic link `./makedemo.unx': File exists ln: creating symbolic link `./makeindx.unx': File exists ln: creating symbolic link `./makenet.unx': File exists ln: creating symbolic link `./makeshlb.unx': File exists ln: creating symbolic link `./readme.unx': File exists ln: creating symbolic link `./ln-if-absent': File exists BLAST version is 2.2.17 make CFLAGS1="-DNDEBUG -O3 -c " LDFLAGS1="-O3" OTHERLIBS="-lm" SHELL="/bin/sh" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" all chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_lbsm.h . make: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . make: [copy] Error 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/*.h ../include mkdir ../include/connect mkdir: cannot create directory `../include/connect': File exists make: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/connect rm ../include/ncbi_*.h ../include/connect_export.h cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . mkdir ../include/ctools mkdir: cannot create directory `../include/ctools': File exists make: [copy] Error 1 (ignored) chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . ./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . echo Waiting...go Waiting...go make -f makedemo.unx CFLAGS1="-DNDEBUG -O3 -c" LDFLAGS1="-O3" SHELL="/bin/sh" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. make: [copy] Error 1 (ignored) chmod -R ug+rw,o+r . echo Waiting...go Waiting...go make -f makedemo.unx CFLAGS1="-DNDEBUG -O3 -c" LDFLAGS1="-O3" SHELL="/bin/sh" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blast -O3 -I../include -L../lib blast_driver.c ncbithr.o -lblastapi \ -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastall -O3 -I../include -L../lib blastall.c ncbithr.o -lblastapi \ -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \ -lm -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastall_old -O3 -I../include -L../lib -DBLASTALL_TOOLS_ONLY blastall.c \ ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi \ -lm -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastpgp -O3 -I../include -L../lib blastpgp.c ncbithr.o -lncbitool \ -lblastcompadj -lncbiobj -lncbi -lm -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o seedtop -O3 -I../include -L../lib seedtop.c ncbithr.o -lncbitool \ -lblastcompadj -lncbiobj -lncbi -lm -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o megablast -O3 -I../include -L../lib megablast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o rpsblast -O3 -I../include -L../lib rpsblast.c ncbithr.o -lblastapi \ -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastclust -O3 -I../include -L../lib blastclust.c ncbithr.o -lncbitool \ -lblastcompadj -lncbiobj -lncbi -lm -lpthread ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' make -f makenet.unx CFLAGS1="-DNDEBUG -O3 -c " LDFLAGS1="-O3" SHELL="/bin/sh" AR="ar" CC="gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" RAN="ranlib" OTHERLIBS="-lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " VIB="blastcl3 idfetch bl2seq asn2gb tbl2asn gene2xml nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi " ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../network/wwwblast/Src/*.h ../include ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. make: [copy] Error 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . echo Waiting...go Waiting...go gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o blastcl3 -O3 -I../include -L../lib -DBLAST_CS_API blastall.c \ -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj \ -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -c -I../include -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o idfetch -O3 -I../include -L../lib idfetch.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o bl2seq -O3 -I../include -L../lib bl2seq.c -lblastapi -lblast -lncbitool \ -lblastcompadj -lncbiid1 -lnetcli -lncbiobj -lncbi \ -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o asn2gb -O3 -I../include -L../lib asn2gb.c -lncbiid1 -lnetcli \ -lncbitool -lblastcompadj -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o tbl2asn -O3 -I../include -L../lib tbl2asn.c -lncbitool -lblastcompadj \ -lncbiobj -lnetcli -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o gene2xml -O3 -I../include -L../lib gene2xml.c -lnetcli -lncbiobj -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o nph-viewgif.cgi -O3 -I../include -L../lib viewgif.c gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o wblast2.REAL -O3 -I../include -L../lib -DBL2SEQ_STANDALONE wblast2.c \ -lblastapi -lncbitool -lblastcompadj -lncbiobj -lblast -lncbi -lm wblast2.c: In function ‘PrintOutScore’: wblast2.c:1052: warning: assignment from incompatible pointer type wblast2.c:1057: warning: assignment from incompatible pointer type wblast2.c:1070: warning: assignment from incompatible pointer type ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o wblast2_cs.REAL -O3 -I../include -L../lib -DNCBI_ENTREZ_CLIENT -DBL2SEQ_STANDALONE \ wblast2.c -lncbiid1 -lnetcli -lblastapi -lncbitool -lblastcompadj \ -lncbiobj -lblast -lncbi \ -lm wblast2.c: In function ‘PrintOutScore’: wblast2.c:1052: warning: assignment from incompatible pointer type wblast2.c:1057: warning: assignment from incompatible pointer type wblast2.c:1070: warning: assignment from incompatible pointer type wblast2.c: In function ‘FindSeqByAccession’: wblast2.c:1573: warning: assignment from incompatible pointer type wblast2.c:1574: warning: assignment from incompatible pointer type wblast2.c:1582: warning: passing argument 1 of ‘Nlm_BSWrite’ from incompatible pointer type ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o bl2bag.cgi -O3 -I../include -L../lib bl2bag.c -lncbi -lm ../lib/libncbi.a(ncbifile.o): In function `Nlm_TmpNam': ncbifile.c:(.text+0x156): warning: the use of `tempnam' is dangerous, better use `mkstemp' Put the date stamp to the file ../VERSION ********************************************************* *The new binaries are located in ./ncbi/build/ directory* *********************************************************